Maude Pupin

maître de conférences-HDR - Informatique
CNU : SECTION 27 - INFORMATIQUE
    +33 3 28 77 85 55
Cité scientifique, bâtiment M3 extension, bureau 229
maude_pupin.jpg

Maude Pupin

maître de conférences-HDR - Informatique

Publications


Article dans des revues

  • Emma Ricart, Valérie Leclère, Areski Flissi, Markus Mueller, Maude Pupin, et al.. rBAN: retro-biosynthetic analysis of nonribosomal peptides. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2019, 11 (1), ⟨10.1186/s13321-019-0335-x⟩. ⟨hal-02167433⟩
  • Maude Pupin, Areski Flissi, Philippe Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. European Journal of Plant Pathology, Springer Verlag, 2018, ⟨10.1007/s10658-018-1544-2⟩. ⟨hal-01937890⟩
  • Qassim Esmaeel, Maude Pupin, Philippe Jacques, Valérie Leclère. Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals. Environmental Science and Pollution Research, Springer Verlag, 2017, ⟨10.1007/s11356-017-9166-3⟩. ⟨hal-01548616⟩
  • Qassim Esmaeel, Maude Pupin, Nam Phuong Kieu, Gabrielle Chataigné, Max Béchet, et al.. Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis. MicrobiologyOpen, Wiley, 2016, 5 (3), pp.512 - 526. ⟨10.1002/mbo3.347⟩. ⟨hal-01398944⟩
  • Yoann Dufresne, Laurent Noé, Valérie Leclère, Maude Pupin. Smiles2Monomers: a link between chemical and biological structures for polymers. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2015, ⟨10.1186/s13321-015-0111-5⟩. ⟨hal-01250619⟩
  • Maude Pupin, Qassim Esmaeel, Areski Flissi, Yoann Dufresne, Philippe Jacques, et al.. Norine: a powerful resource for novel nonribosomal peptide discovery. Synthetic and Systems Biotechnology, KeAi, 2015, ⟨10.1016/j.synbio.2015.11.001⟩. ⟨hal-01250614⟩
  • Areski Flissi, Yoann Dufresne, Juraj Michalik, Laurie Tonon, Stéphane Janot, et al.. Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. Nucleic Acids Research, Oxford University Press, 2015, ⟨10.1093/nar/gkv1143⟩. ⟨hal-01235996⟩
  • Thibault Caradec, Maude Pupin, Aurélien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Smaïl-Tabbone, et al.. Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e85667. ⟨10.1371/journal.pone.0085667⟩. ⟨hal-01090619⟩
  • Ammar Abdo, Valérie Leclère, Philippe Jacques, Naomie Salim, Maude Pupin. Prediction of New Bioactive Molecules using a Bayesian Belief Network. Journal of Chemical Information and Modeling, American Chemical Society, 2014, 54 (1), pp.30-36. ⟨10.1021/ci4004909⟩. ⟨hal-01090611⟩
  • Ammar Hasan Abdo, Ségolène Caboche, Valérie Leclère, Philippe Jacques, Maude Pupin. A new fingerprint to predict nonribosomal peptides activity.. Journal of Computer-Aided Molecular Design, Springer Verlag, 2012, 26 (10), pp.1187-94. ⟨10.1007/s10822-012-9608-4⟩. ⟨hal-00750002⟩
  • Max Béchet, Thibault Caradec, Walaa Hussein, Ahmed Abderrahmani, Marlène Chollet, et al.. Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.. Applied Microbiology and Biotechnology, Springer Verlag, 2012, 95 (3), pp.593-600. ⟨10.1007/s00253-012-4181-2⟩. ⟨hal-00749819⟩
  • Ségolène Caboche, Valérie Leclère, Maude Pupin, Gregory Kucherov, Philippe Jacques. Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.. Journal of Bacteriology, American Society for Microbiology, 2010, 192 (19), pp.5143-50. ⟨10.1128/JB.00315-10⟩. ⟨hal-00641488⟩
  • Maude Pupin. Des peptides à explorer. Interstices, INRIA, 2010, ⟨https://interstices.info/jcms/c_42760/des-peptides-a-explorer⟩. ⟨hal-01350197⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Philippe Jacques, Gregory Kucherov. Structural pattern matching of nonribosomal peptides.. BMC Structural Biology, BioMed Central, 2009, 9 (15), ⟨10.1186/1472-6807-9-15⟩. ⟨hal-00641486⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Arnaud Fontaine, Philippe Jacques, et al.. NORINE: a database of nonribosomal peptides.. Nucleic Acids Research, Oxford University Press, 2008, Database issue, 36 (Database issue), pp.D326-31. ⟨10.1093/nar/gkm792⟩. ⟨inria-00281012⟩
  • Gilles Didier, Laurent Debomy, Maude Pupin, Ming Zhang, Alexander Grossmann, et al.. Comparing sequences without using alignments: application to HIV/SIV subtyping. BMC Bioinformatics, BioMed Central, 2007, 8 (1), ⟨10.1186/1471-2105-8-1⟩. ⟨inria-00289069⟩
  • Gilles Didier, Ivan Laprevotte, Maude Pupin, Alain Hénaut. Local Decoding of Sequences and Alignment-Free Comparison. Journal of Computational Biology, Mary Ann Liebert, 2006, 13 (8), pp.1465-1476. ⟨10.1089/cmb.2006.13.1465⟩. ⟨inria-00289089⟩

Communication dans un congrès

  • Philippe Marquet, Maude Pupin, Yann Secq. L codent, L créent: créations numériques artistiques pour démystifier l'informatique... au féminin! (descriptif d’atelier). Didapro 7 – DidaSTIC. De 0 à 1 ou l’heure de l’informatique à l’école, Feb 2018, Lausanne, Suisse. pp.1-2. ⟨hal-01753402⟩
  • Tatiana Rocher, Maude Pupin, Philippe Marquet, Yann Secq. How to make teenage girls love coding ?. womENcourage2017 - 4th ACM Europe Celebration of Women in Computing, ACM, Sep 2017, Barcelona, Spain. ⟨hal-01552490⟩
  • Maude Pupin, Philippe Marquet, Yann Secq. How to make teenage girls love coding using Python and the visual arts orienting language Processing ?. PyParis2017, Systematic Paris Region, Jun 2017, Paris, La Défense, France. ⟨hal-01552487⟩
  • Yoann Dufresne, Valérie Leclère, Philippe Jacques, Laurent Noé, Maude Pupin. Non Ribosomal Peptides : A monomeric puzzle. JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. pp.143-150. ⟨hal-00843827⟩
  • Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère. NRPS toolbox for the discovery of new nonribosomal peptides and synthetases. Journées Ouvertes en Biologie, l'Informatique et les Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. pp.89-93. ⟨hal-00734312⟩

Poster

  • Qassim Esmaeel, Yoann Dufresne, Areski Flissi, Maude Pupin, Philippe Jacques, et al.. Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities. FEMS 2017 - 7th congress of Federation of European Microbiology societies, Jul 2017, Valencia, Spain. ⟨hal-01888999⟩
  • Yoann Dufresne, Juraj Michalik, Areski Flissi, Valérie Leclère, Maude Pupin. Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. ⟨hal-01889117⟩

Chapitre d'ouvrage

  • Valérie Leclère, Tilmann Weber, Philippe Jacques, Maude Pupin. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides. Bradley S. Evans. Nonribosomal Peptide and Polyketide Biosynthesis, 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4. ⟨10.1007/978-1-4939-3375-4_14⟩. ⟨hal-01398960⟩

HDR

  • Maude Pupin. Modèles bio-informatiques pour les peptides non-ribosomiques et leurs synthétases. Bio-informatique [q-bio.QM]. Université des Sciences et Technologie de Lille - Lille I, 2013. ⟨tel-00918918⟩