Maude Pupin
Professeure des universités
CNU : SECTION 27 - INFORMATIQUE
Laboratoire / équipe
Contact
maude.pupin[chez]univ-lille[point].fr
+33 3 28 77 85 55
Cité scientifique, bâtiment M3 extension, bureau 208 et bâtiment ESPRIT, bureau S3.47
Publications
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"Ségolène Caboche"],
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"citationFull_s":"Patricia Everaere, Philippe Marquet, Maude Pupin, Yann Secq. Dispositifs pour favoriser la venue des adolescentes dans les filières informatiques.. <i>Diversité, Réussite[s] dans l’Enseignement Supérieur (2024)</i>, Nantes Université [Nantes Univ], Apr 2024, Nantes, France. <a target=\"_blank\" href=\"https://hal.science/hal-04557120\">⟨hal-04557120⟩</a>",
"title_s":["Dispositifs pour favoriser la venue des adolescentes dans les filières informatiques."],
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"citationRef_s":"<i>Scientific African</i>, 2023, 20, pp.e01714. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.sciaf.2023.e01714\">⟨10.1016/j.sciaf.2023.e01714⟩</a>",
"citationFull_s":"Blaise Waongo, Maude Pupin, Matthieu Duban, Gabrielle Chataigne, Oumarou Zongo, et al.. Kawal: A fermented food as a source of Bacillus strain producing antimicrobial peptides. <i>Scientific African</i>, 2023, 20, pp.e01714. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.sciaf.2023.e01714\">⟨10.1016/j.sciaf.2023.e01714⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04426241\">⟨hal-04426241⟩</a>",
"title_s":["Kawal: A fermented food as a source of Bacillus strain producing antimicrobial peptides"],
"authFullName_s":["Blaise Waongo",
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"Matthieu Duban",
"Gabrielle Chataigne",
"Oumarou Zongo",
"Hama Cisse",
"Aly Savadogo",
"Valérie Leclere"],
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"citationRef_s":"Licence. Informatique, Université de Lille, Villeneuve d'Ascq, France. 2022, pp.211",
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"citationRef_s":"<i>Symposium Natural Products (Meta)Genome Mining</i>, Novo Nordisk Foundation Science Cluster, May 2022, Copenhagen, Denmark",
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"citationRef_s":"<i>Journal of Computer-Aided Molecular Design</i>, 2022, 36 (1), pp.77-85. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s10822-021-00440-3\">⟨10.1007/s10822-021-00440-3⟩</a>",
"citationFull_s":"Ammar Abdo, Maude Pupin. Turbo prediction: a new approach for bioactivity prediction. <i>Journal of Computer-Aided Molecular Design</i>, 2022, 36 (1), pp.77-85. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s10822-021-00440-3\">⟨10.1007/s10822-021-00440-3⟩</a>. <a target=\"_blank\" href=\"https://cnrs.hal.science/hal-03833232\">⟨hal-03833232⟩</a>",
"title_s":["Turbo prediction: a new approach for bioactivity prediction"],
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"citationFull_s":"Maude Pupin, Ammar Abdo. LINGO-DL: a text-based approach for molecular similarity searching. <i>Journal of Computer-Aided Molecular Design</i>, 2021, 35 (5), pp.657-665. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s10822-021-00383-9\">⟨10.1007/s10822-021-00383-9⟩</a>. <a target=\"_blank\" href=\"https://cnrs.hal.science/hal-03461046\">⟨hal-03461046⟩</a>",
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"citationFull_s":"Emma Ricart, Maude Pupin, Markus Müller, Frédérique Lisacek. Automatic Annotation and Dereplication of Tandem Mass Spectra of Peptidic Natural Products. <i>Analytical Chemistry</i>, 2020, 92 (24), pp.15862-15871. <a target=\"_blank\" href=\"https://dx.doi.org/10.1021/acs.analchem.0c03208\">⟨10.1021/acs.analchem.0c03208⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03082142\">⟨hal-03082142⟩</a>",
"title_s":["Automatic Annotation and Dereplication of Tandem Mass Spectra of Peptidic Natural Products"],
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"Markus Müller",
"Frédérique Lisacek"],
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"citationFull_s":"Ammar Abdo, Eissa Ghaleb, Naser Alajmi, Maude Pupin. Monomer structure fingerprints: an extension of the monomer composition version for peptide databases. <i>Journal of Computer-Aided Molecular Design</i>, 2020, 34 (11), pp.1147-1156. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s10822-020-00336-8\">⟨10.1007/s10822-020-00336-8⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03081813\">⟨hal-03081813⟩</a>",
"title_s":["Monomer structure fingerprints: an extension of the monomer composition version for peptide databases"],
"authFullName_s":["Ammar Abdo",
"Eissa Ghaleb",
"Naser Alajmi",
"Maude Pupin"],
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"citationRef_s":"<i>Bioinformatics</i>, 2020, 36 (15), pp.4345-4347. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btaa517\">⟨10.1093/bioinformatics/btaa517⟩</a>",
"citationFull_s":"Loïc Meunier, Pierre Tocquin, Luc Cornet, Damien Sirjacobs, Valérie Leclère, et al.. Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects. <i>Bioinformatics</i>, 2020, 36 (15), pp.4345-4347. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btaa517\">⟨10.1093/bioinformatics/btaa517⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03081849\">⟨hal-03081849⟩</a>",
"title_s":["Palantir: a springboard for the analysis of secondary metabolite gene clusters in large-scale genome mining projects"],
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"Pierre Tocquin",
"Luc Cornet",
"Damien Sirjacobs",
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"citationFull_s":"Pascale Gautron, Cécile Plaud, Maude Pupin, Vincent Ribaud, Yann Secq. Les filles qui… et L Codent L Créent : constituer un bien commun de médiation en informatique. <i>Ludovia#CH - Université de printemps</i>, Apr 2020, Yverdon-les-bains, Suisse. <a target=\"_blank\" href=\"https://hal.univ-brest.fr/hal-02911731\">⟨hal-02911731⟩</a>",
"title_s":["Les filles qui… et L Codent L Créent : constituer un bien commun de médiation en informatique"],
"authFullName_s":["Pascale Gautron",
"Cécile Plaud",
"Maude Pupin",
"Vincent Ribaud",
"Yann Secq"],
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"citationFull_s":"Laure Bolka-Tabary, Maude Pupin, Yann Secq. Stage d’observation de troisième : “Wi Code, Wi Build”. <i>DIDAPRO 8 – DIDASTIC L’informatique, objets d’enseignements – enjeux épistémologiques, didactiques et de formation</i>, Feb 2020, Lille, France. <a target=\"_blank\" href=\"https://hal.science/hal-03081192\">⟨hal-03081192⟩</a>",
"title_s":["Stage d’observation de troisième : “Wi Code, Wi Build”"],
"authFullName_s":["Laure Bolka-Tabary",
"Maude Pupin",
"Yann Secq"],
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"citationRef_s":"<i>14emes rencontres plantes-bactéries</i>, Jan 2020, Aussois, France",
"citationFull_s":"Matthieu Duban, Maude Pupin, Areski Flissi, L. Couderc, Hélène Touzet, et al.. Genome mining for screening and characterization of new lipopeptides with biocontrol applications.. <i>14emes rencontres plantes-bactéries</i>, Jan 2020, Aussois, France. <a target=\"_blank\" href=\"https://hal.science/hal-04547627\">⟨hal-04547627⟩</a>",
"title_s":["Genome mining for screening and characterization of new lipopeptides with biocontrol applications."],
"authFullName_s":["Matthieu Duban",
"Maude Pupin",
"Areski Flissi",
"L. Couderc",
"Hélène Touzet",
"Louis Meunier",
"Denis Baurain",
"Olumide Owolabi Omoboye",
"Monica Höfte",
"Alexandre Bricout",
"Alice Rochex",
"Mickaël Chevalier",
"Christophe Flahaut",
"Quassim Esmaël",
"Essaid Ait Barka",
"Philippe Jacques",
"Valérie Leclère"],
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"citationRef_s":"<i>Journal of Cheminformatics</i>, 2019, 11 (1), pp.1-14. <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s13321-019-0335-x\">⟨10.1186/s13321-019-0335-x⟩</a>",
"citationFull_s":"Emma Ricart, Valérie Leclère, Areski Flissi, Markus Mueller, Maude Pupin, et al.. rBAN: retro-biosynthetic analysis of nonribosomal peptides. <i>Journal of Cheminformatics</i>, 2019, 11 (1), pp.1-14. <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s13321-019-0335-x\">⟨10.1186/s13321-019-0335-x⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02167433\">⟨hal-02167433⟩</a>",
"title_s":["rBAN: retro-biosynthetic analysis of nonribosomal peptides"],
"authFullName_s":["Emma Ricart",
"Valérie Leclère",
"Areski Flissi",
"Markus Mueller",
"Maude Pupin",
"Frederique Lisacek"],
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"citationFull_s":"Mickael Chevalier, Emma Ricart, Emeline Hanozin, Maude Pupin, Philippe Jacques, et al.. Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides. <i>Journal of The American Society for Mass Spectrometry</i>, 2019, 30 (12), pp.2608-2616. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s13361-019-02314-3\">⟨10.1007/s13361-019-02314-3⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02417587\">⟨hal-02417587⟩</a>",
"title_s":["Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides"],
"authFullName_s":["Mickael Chevalier",
"Emma Ricart",
"Emeline Hanozin",
"Maude Pupin",
"Philippe Jacques",
"Nicolas Smargiasso",
"Edwin de Pauw",
"Frédérique Lisacek",
"Valérie Leclère",
"Christophe Flahaut"],
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"citationRef_s":"<i>14th International IUPAC Congress</i>, May 2019, Ghent, Belgium",
"citationFull_s":"Mickaël Chevalier, Emma Ricart, Emeline Hanozin, S Matthijs, Maude Pupin, et al.. Challenge of nonribosomal peptide (NRP) identification: Kendrick mass defect for molecular formula assignment of NRPs.. <i>14th International IUPAC Congress</i>, May 2019, Ghent, Belgium. <a target=\"_blank\" href=\"https://hal.science/hal-04547602\">⟨hal-04547602⟩</a>",
"title_s":["Challenge of nonribosomal peptide (NRP) identification: Kendrick mass defect for molecular formula assignment of NRPs."],
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"Emma Ricart",
"Emeline Hanozin",
"S Matthijs",
"Maude Pupin",
"Philippe Jacques",
"Nicolas Smargiasso",
"Edwin de Pauw",
"Frederique Lisacek",
"Valérie Leclère",
"Christophe Flahaut"],
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"citationFull_s":"Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, et al.. Norine: update of the nonribosomal peptide resource. <i>Nucleic Acids Research</i>, 2019, <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/nar/gkz1000\">⟨10.1093/nar/gkz1000⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02376009\">⟨hal-02376009⟩</a>",
"title_s":["Norine: update of the nonribosomal peptide resource"],
"authFullName_s":["Areski Flissi",
"Emma Ricart",
"Clémentine Campart",
"Mickael Chevalier",
"Yoann Dufresne",
"Juraj Michalik",
"Philippe Jacques",
"Christophe Flahaut",
"Frederique Lisacek",
"Valérie Leclère",
"Maude Pupin"],
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"citationFull_s":"Maude Pupin, Areski Flissi, Philippe Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. <i>European Journal of Plant Pathology</i>, 2018, <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s10658-018-1544-2\">⟨10.1007/s10658-018-1544-2⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01937890\">⟨hal-01937890⟩</a>",
"title_s":["Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications"],
"authFullName_s":["Maude Pupin",
"Areski Flissi",
"Philippe Jacques",
"Valérie Leclère"],
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"citationRef_s":"<i>Didapro 7 – DidaSTIC. De 0 à 1 ou l’heure de l’informatique à l’école</i>, Feb 2018, Lausanne, Suisse. pp.1-2",
"citationFull_s":"Philippe Marquet, Maude Pupin, Yann Secq. L codent, L créent: créations numériques artistiques pour démystifier l'informatique... au féminin! (descriptif d’atelier). <i>Didapro 7 – DidaSTIC. De 0 à 1 ou l’heure de l’informatique à l’école</i>, Feb 2018, Lausanne, Suisse. pp.1-2. <a target=\"_blank\" href=\"https://hal.science/hal-01753402\">⟨hal-01753402⟩</a>",
"title_s":["L codent, L créent: créations numériques artistiques pour démystifier l'informatique... au féminin! (descriptif d’atelier)"],
"authFullName_s":["Philippe Marquet",
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"Yann Secq"],
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"citationRef_s":"<i>womENcourage2017 - 4th ACM Europe Celebration of Women in Computing</i>, ACM, Sep 2017, Barcelona, Spain",
"citationFull_s":"Tatiana Rocher, Maude Pupin, Philippe Marquet, Yann Secq. How to make teenage girls love coding ?. <i>womENcourage2017 - 4th ACM Europe Celebration of Women in Computing</i>, ACM, Sep 2017, Barcelona, Spain. <a target=\"_blank\" href=\"https://inria.hal.science/hal-01552490\">⟨hal-01552490⟩</a>",
"title_s":["How to make teenage girls love coding ?"],
"authFullName_s":["Tatiana Rocher",
"Maude Pupin",
"Philippe Marquet",
"Yann Secq"],
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"citationRef_s":"<i>FEMS 2017 - 7th congress of Federation of European Microbiology societies</i>, Jul 2017, Valencia, Spain",
"citationFull_s":"Qassim Esmaeel, Yoann Dufresne, Areski Flissi, Maude Pupin, Philippe Jacques, et al.. Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities. <i>FEMS 2017 - 7th congress of Federation of European Microbiology societies</i>, Jul 2017, Valencia, Spain. <a target=\"_blank\" href=\"https://hal.science/hal-01888999\">⟨hal-01888999⟩</a>",
"title_s":["Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities"],
"authFullName_s":["Qassim Esmaeel",
"Yoann Dufresne",
"Areski Flissi",
"Maude Pupin",
"Philippe Jacques",
"Valérie Leclère"],
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"citationRef_s":"<i>JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques</i>, Jul 2017, Lille, France",
"citationFull_s":"Yoann Dufresne, Juraj Michalik, Areski Flissi, Valérie Leclère, Maude Pupin. Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base. <i>JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques</i>, Jul 2017, Lille, France. <a target=\"_blank\" href=\"https://hal.science/hal-01889117\">⟨hal-01889117⟩</a>",
"title_s":["Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base"],
"authFullName_s":["Yoann Dufresne",
"Juraj Michalik",
"Areski Flissi",
"Valérie Leclère",
"Maude Pupin"],
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"citationRef_s":"<i>PyParis2017</i>, Systematic Paris Region, Jun 2017, Paris, La Défense, France",
"citationFull_s":"Maude Pupin, Philippe Marquet, Yann Secq. How to make teenage girls love coding using Python and the visual arts orienting language Processing ?. <i>PyParis2017</i>, Systematic Paris Region, Jun 2017, Paris, La Défense, France. <a target=\"_blank\" href=\"https://inria.hal.science/hal-01552487\">⟨hal-01552487⟩</a>",
"title_s":["How to make teenage girls love coding using Python and the visual arts orienting language Processing ?"],
"authFullName_s":["Maude Pupin",
"Philippe Marquet",
"Yann Secq"],
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