Valerie Leclere

professeure des universités - Microbiologie/Biotechnologies
CNU : SECTION 65 - BIOLOGIE CELLULAIRE
    +33 320 41 75 68
Polytech C320
valerie_leclere.jpg

Valerie Leclere

professeure des universités - Microbiologie/Biotechnologies

Publications

Article dans des revues

  • Emma Ricart, Valérie Leclère, Areski Flissi, Markus Mueller, Maude Pupin, et al.. rBAN: retro-biosynthetic analysis of nonribosomal peptides. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2019, 11 (1), pp.1-14. ⟨10.1186/s13321-019-0335-x⟩. ⟨hal-02167433⟩
  • Antoine Vassaux, Loic Meunier, Micheline Vandenbol, Denis Baurain, Patrick Fickers, et al.. Nonribosomal peptides in fungal cell factories: from genome mining to optimized heterologous production. Biotechnology Advances, Elsevier, 2019, 37 (8), pp.1-23. ⟨10.1016/j.biotechadv.2019.107449⟩. ⟨hal-02570530⟩
  • Mickael Chevalier, Emma Ricart, Emeline Hanozin, Maude Pupin, Philippe Jacques, et al.. Kendrick Mass Defect Approach Combined to NORINE Database for Molecular Formula Assignment of Nonribosomal Peptides. Journal of The American Society for Mass Spectrometry, Springer Verlag (Germany), 2019, 30 (12), pp.2608-2616. ⟨10.1007/s13361-019-02314-3⟩. ⟨hal-02417587⟩
  • Areski Flissi, Emma Ricart, Clémentine Campart, Mickael Chevalier, Yoann Dufresne, et al.. Norine: update of the nonribosomal peptide resource. Nucleic Acids Research, Oxford University Press, 2019. ⟨hal-02376009⟩
  • Antoine Vassaux, Cedric Tarayre, Anthony Arguelles-Arias, Philippe Compère, Frank Delvigne, et al.. Astin c production by the endophytic fungus cyanodermella asteris in planktonic and immobilized culture conditions. Biotechnology Journal, Wiley-VCH Verlag, 2019, 14 (8), pp.1-11. ⟨10.1002/biot.201800624⟩. ⟨hal-02627915⟩
  • Olumide Owolabi Omoboye, Niels Geudens, Matthieu Duban, Mickael Chevalier, Christophe Flahaut, et al.. Pseudomonas sp. COW3 Produces New Bananamide-Type Cyclic Lipopeptides with Antimicrobial Activity against Pythium myriotylum and Pyricularia oryzae. Molecules, MDPI, 2019, 24 (22), ⟨10.3390/molecules24224170⟩. ⟨hal-02623494⟩
  • Maude Pupin, Areski Flissi, Philippe Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. European Journal of Plant Pathology, Springer Verlag, 2018, ⟨10.1007/s10658-018-1544-2⟩. ⟨hal-01937890⟩
  • Lamia Abdellaziz, Marlène Chollet, Ahmed Abderrahmani, Max Béchet, Lamia Yaici, et al.. Lipopeptide biodiversity in antifungal Bacillus strains isolated from Algeria. Archives of Microbiology, Springer Verlag, 2018, 200 (8), pp.1205-1216. ⟨10.1007/s00203-018-1537-8⟩. ⟨hal-02620924⟩
  • Qassim Esmaeel, Lidiane Miotto, Marine Rondeau, Valérie Leclère, Christophe Clément, et al.. Paraburkholderia phytofirmans PsJN-Plants Interaction: From Perception to the Induced Mechanisms. Frontiers in Microbiology, Frontiers Media, 2018, 9, ⟨10.3389/fmicb.2018.02093⟩. ⟨hal-02620923⟩
  • Qassim Esmaeel, Maude Pupin, Philippe Jacques, Valérie Leclère. Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals. Environmental Science and Pollution Research, Springer Verlag, 2017, ⟨10.1007/s11356-017-9166-3⟩. ⟨hal-01548616⟩
  • Qassim Esmaeel, Maude Pupin, Nam Phuong Kieu, Gabrielle Chataigné, Max Béchet, et al.. Burkholderia genome mining for nonribosomal peptide synthetases reveals a great potential for novel siderophores and lipopeptides synthesis. MicrobiologyOpen, Wiley, 2016, 5 (3), pp.512 - 526. ⟨10.1002/mbo3.347⟩. ⟨hal-01398944⟩
  • Qassim Esmaeel, Mickael Chevalier, Gabrielle Chataigne, Rathinasamy Subashkumar, Philippe Jacques, et al.. Nonribosomal peptide synthetase with a unique iterative-alternative-optional mechanism catalyzes amonabactin synthesis in Aeromonas. Applied Microbiology and Biotechnology, Springer Verlag, 2016, 100 (19), pp.8453-8463. ⟨10.1007/s00253-016-7773-4⟩. ⟨hal-01601408⟩
  • Yoann Dufresne, Laurent Noé, Valérie Leclère, Maude Pupin. Smiles2Monomers: a link between chemical and biological structures for polymers. Journal of Cheminformatics, Chemistry Central Ltd. and BioMed Central, 2015, 7, ⟨10.1186/s13321-015-0111-5⟩. ⟨hal-01250619⟩
  • Maude Pupin, Qassim Esmaeel, Areski Flissi, Yoann Dufresne, Philippe Jacques, et al.. Norine: a powerful resource for novel nonribosomal peptide discovery. Synthetic and Systems Biotechnology, KeAi, 2015, ⟨10.1016/j.synbio.2015.11.001⟩. ⟨hal-01250614⟩
  • Areski Flissi, Yoann Dufresne, Juraj Michalik, Laurie Tonon, Stéphane Janot, et al.. Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing. Nucleic Acids Research, Oxford University Press, 2015, ⟨10.1093/nar/gkv1143⟩. ⟨hal-01235996⟩
  • Thibault Caradec, Maude Pupin, Aurélien Vanvlassenbroeck, Marie-Dominique Devignes, Malika Smaïl-Tabbone, et al.. Prediction of Monomer Isomery in Florine: A Workflow Dedicated to Nonribosomal Peptide Discovery. PLoS ONE, Public Library of Science, 2014, 9 (1), pp.e85667. ⟨10.1371/journal.pone.0085667⟩. ⟨hal-01090619⟩
  • Ammar Abdo, Valérie Leclère, Philippe Jacques, Naomie Salim, Maude Pupin. Prediction of New Bioactive Molecules using a Bayesian Belief Network. Journal of Chemical Information and Modeling, American Chemical Society, 2014, 54 (1), pp.30-36. ⟨10.1021/ci4004909⟩. ⟨hal-01090611⟩
  • Ammar Hasan Abdo, Ségolène Caboche, Valérie Leclère, Philippe Jacques, Maude Pupin. A new fingerprint to predict nonribosomal peptides activity.. Journal of Computer-Aided Molecular Design, Springer Verlag, 2012, 26 (10), pp.1187-94. ⟨10.1007/s10822-012-9608-4⟩. ⟨hal-00750002⟩
  • Max Béchet, Thibault Caradec, Walaa Hussein, Ahmed Abderrahmani, Marlène Chollet, et al.. Structure, biosynthesis, and properties of kurstakins, nonribosomal lipopeptides from Bacillus spp.. Applied Microbiology and Biotechnology, Springer Verlag, 2012, 95 (3), pp.593-600. ⟨10.1007/s00253-012-4181-2⟩. ⟨hal-00749819⟩
  • Ségolène Caboche, Valérie Leclère, Maude Pupin, Gregory Kucherov, Philippe Jacques. Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.. Journal of Bacteriology, American Society for Microbiology, 2010, 192 (19), pp.5143-50. ⟨10.1128/JB.00315-10⟩. ⟨hal-00641488⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Philippe Jacques, Gregory Kucherov. Structural pattern matching of nonribosomal peptides.. BMC Structural Biology, BioMed Central, 2009, 9 (15), ⟨10.1186/1472-6807-9-15⟩. ⟨hal-00641486⟩
  • Ségolène Caboche, Maude Pupin, Valérie Leclère, Arnaud Fontaine, Philippe Jacques, et al.. NORINE: a database of nonribosomal peptides.. Nucleic Acids Research, Oxford University Press, 2008, Database issue, 36 (Database issue), pp.D326-31. ⟨10.1093/nar/gkm792⟩. ⟨inria-00281012⟩

Communication dans un congrès

  • M. Pupin, A. Flissi, P. Jacques, Valérie Leclère. Bioinformatics tools for the discovery of new lipopeptides with biocontrol applications. Joint Conference of the 12. Conference of the European-Foundation-for-Plant-Pathology (EFPP) / 10. Conference of the French-Society-for-Phytopathology (SFP), May 2017, Dordrecht, France. pp.9, ⟨10.1007/s10658-018-1544-2⟩. ⟨hal-02736923⟩
  • Qassim Esmaeel, Maude Pupin, Philippe Jacques, Valérie Leclère. Nonribosomal peptides and polyketides of Burkholderia: new compounds potentially implicated in biocontrol and pharmaceuticals. 3. Biennial International Congress on Natural Products and Biocontrol, Sep 2016, Perpignan, France. ⟨10.1007/s11356-017-9166-3⟩. ⟨hal-02737697⟩
  • Yoann Dufresne, Valérie Leclère, Philippe Jacques, Laurent Noé, Maude Pupin. Non Ribosomal Peptides : A monomeric puzzle. JOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. pp.143-150. ⟨hal-00843827⟩
  • François Coutte, Mathias John, Max Béchet, Mirabelle Nebut, Joachim Niehren, et al.. Synthetic Engineering of Bacillus subtilis to Overproduce Lipopeptide Biosurfactants. 9th European Symposium on Biochemical Engineering Science, Sep 2012, Istanbul, Turkey. ⟨hal-00717261⟩
  • Maude Pupin, Malika Smaïl-Tabbone, Philippe Jacques, Marie-Dominique Devignes, Valérie Leclère. NRPS toolbox for the discovery of new nonribosomal peptides and synthetases. Journées Ouvertes en Biologie, l'Informatique et les Mathématiques - JOBIM 2012, Jul 2012, Rennes, France. pp.89-93. ⟨hal-00734312⟩

Poster

  • Qassim Esmaeel, Yoann Dufresne, Areski Flissi, Maude Pupin, Philippe Jacques, et al.. Norine, Florine, s2m : powerful bioinformatics resource and tools for the discovery of novel nonribosomal peptides, natural metabolites with versatile activities. FEMS 2017 - 7th congress of Federation of European Microbiology societies, Jul 2017, Valencia, Spain. ⟨hal-01888999⟩
  • Yoann Dufresne, Juraj Michalik, Areski Flissi, Valérie Leclère, Maude Pupin. Data updates on Norine, the reference Non-Ribosomal Peptide knowledge base. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. ⟨hal-01889117⟩

Chapitre d'ouvrage

  • Valérie Leclère, Tilmann Weber, Philippe Jacques, Maude Pupin. Bioinformatics Tools for the Discovery of New Nonribosomal Peptides. Bradley S. Evans. Nonribosomal Peptide and Polyketide Biosynthesis, 1401, Humana Press, pp.209-232, 2016, Methods in Molecular Biology, 978-1-4939-3373-0 978-1-4939-3375-4. ⟨10.1007/978-1-4939-3375-4_14⟩. ⟨hal-01398960⟩