Mohamed Elati
Professeur des universités
CNU : SECTION 27 - INFORMATIQUE
Laboratoire / équipe
Publications
{
"response":{
"numFound":36,
"start":0,
"numFoundExact":true,
"docs":[{
"citationRef_s":"2024",
"citationFull_s":"Liangwei Yin, Pietro Traversa, Mohamed Elati, Yamir Moreno, Natalia Marek-Trzonkowska, et al.. Sample-specific network analysis identifies gene coexpression patterns of immunotherapy response in advanced kidney cancer. 2024. <a target=\"_blank\" href=\"https://hal.science/hal-04777107v1\">⟨hal-04777107⟩</a>",
"title_s":["Sample-specific network analysis identifies gene coexpression patterns of immunotherapy response in advanced kidney cancer"],
"authFullName_s":["Liangwei Yin","Pietro Traversa","Mohamed Elati","Yamir Moreno","Natalia Marek-Trzonkowska","Christophe Battail"],
"halId_s":"hal-04777107",
"docType_s":"UNDEFINED",
"producedDateY_i":2024
},{
"citationRef_s":"2024",
"citationFull_s":"Chloe Bernhard, Konstantinos Geles, Geoffrey Pawlak, Wajdi Dhifli, Aurelien Dispot, et al.. A coregulatory influence map of glioblastoma heterogeneity and plasticity - From cells in vitro to tumors and back again. 2024. <a target=\"_blank\" href=\"https://hal.science/hal-04750456v1\">⟨hal-04750456⟩</a>",
"title_s":["A coregulatory influence map of glioblastoma heterogeneity and plasticity - From cells in vitro to tumors and back again"],
"authFullName_s":["Chloe Bernhard","Konstantinos Geles","Geoffrey Pawlak","Wajdi Dhifli","Aurelien Dispot","Jules Dusol","Maria Kondratova","Sophie Martin","Melissa Messe","Damien Reita","David Tulasne","Isabelle Van Seuningen","Natacha Entz-Werle","Silvia-Anna Ciafre","Monique Dontenwill","Mohamed Elati"],
"halId_s":"hal-04750456",
"docType_s":"UNDEFINED",
"producedDateY_i":2024
},{
"citationRef_s":"2024",
"citationFull_s":"Nour El Islem Karabadji, Abdelaziz Amara Korba, Ali Assi, Hassina Seridi, Mohamed Aimen, et al.. A Genetic and Graph-Guided Feature Learning Strategy for Improving Decision Tree Construction. 2024. <a target=\"_blank\" href=\"https://hal.science/hal-04689420v1\">⟨hal-04689420⟩</a>",
"title_s":["A Genetic and Graph-Guided Feature Learning Strategy for Improving Decision Tree Construction"],
"authFullName_s":["Nour El Islem Karabadji","Abdelaziz Amara Korba","Ali Assi","Hassina Seridi","Mohamed Aimen","Yacine Ghamri-Doudane","Abdelghani Lakhdari","Mohamed Elati","Wajdi Dhifli"],
"halId_s":"hal-04689420",
"docType_s":"UNDEFINED",
"producedDateY_i":2024
},{
"citationRef_s":"<i>Biochimica et Biophysica Acta - Molecular Basis of Disease</i>, 2024, 1870 (8), pp.167471. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.bbadis.2024.167471\">⟨10.1016/j.bbadis.2024.167471⟩</a>",
"citationFull_s":"Mélissa Messé, Chloé Bernhard, Sophie Foppolo, Lionel Thomas, Patrice Marchand, et al.. Hypoxia-driven heterogeneous expression of α5 integrin in glioblastoma stem cells is linked to HIF-2α. <i>Biochimica et Biophysica Acta - Molecular Basis of Disease</i>, 2024, 1870 (8), pp.167471. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.bbadis.2024.167471\">⟨10.1016/j.bbadis.2024.167471⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04748881v1\">⟨hal-04748881⟩</a>",
"title_s":["Hypoxia-driven heterogeneous expression of α5 integrin in glioblastoma stem cells is linked to HIF-2α"],
"authFullName_s":["Mélissa Messé","Chloé Bernhard","Sophie Foppolo","Lionel Thomas","Patrice Marchand","Christel Herold-Mende","Ahmed Idbaih","Horst Kessler","Nelly Etienne-Selloum","Charles Ochoa","Uttam K Tambar","Mohamed Elati","Patrice Laquerriere","Natacha Entz-Werlé","Sophie Martin","Damien Reita","Monique Dontenwill"],
"halId_s":"hal-04748881",
"docType_s":"ART",
"producedDateY_i":2024
},{
"citationRef_s":"<i>Club d'Etude des Cellules Epithéliales Digestives</i>, CECED, Mar 2024, Montpellier (34000), France",
"citationFull_s":"Bénédicte Caron, Jeanny Tchiloemba-Biakou, Nicolas Jonckheere, Andréa Thévenot, Mohamed Elati, et al.. L’expression ectopique de CDX2 dans le pancréas exerce un effet prooncogénique, dépendant du domaine de liaison à l’ADN mais indépendant dudomaine de transactivation. <i>Club d'Etude des Cellules Epithéliales Digestives</i>, CECED, Mar 2024, Montpellier (34000), France. <a target=\"_blank\" href=\"https://hal.science/hal-04534767v1\">⟨hal-04534767⟩</a>",
"title_s":["L’expression ectopique de CDX2 dans le pancréas exerce un effet prooncogénique, dépendant du domaine de liaison à l’ADN mais indépendant dudomaine de transactivation"],
"authFullName_s":["Bénédicte Caron","Jeanny Tchiloemba-Biakou","Nicolas Jonckheere","Andréa Thévenot","Mohamed Elati","Asmaa Nair","Vinciane Rebours","Claire Domon-Dell","Isabelle Van Seuningen","Jean-Marie Reimund","Jean-Noël Freund","Isabelle Duluc"],
"halId_s":"hal-04534767",
"docType_s":"COMM",
"producedDateY_i":2024
},{
"citationRef_s":"2023",
"citationFull_s":"Aura Ileana Moreno Vega, Macarena Zambrano, Julia Puig, Florent Dufour, Clarice Groeneveld, et al.. Identification of a key oncogenic role of p63 in altered-FGFR3 tumors through inference of bladder cancer gene regulatory network and functional validations. 2023. <a target=\"_blank\" href=\"https://hal.science/hal-04687147v1\">⟨hal-04687147⟩</a>",
"title_s":["Identification of a key oncogenic role of p63 in altered-FGFR3 tumors through inference of bladder cancer gene regulatory network and functional validations"],
"authFullName_s":["Aura Ileana Moreno Vega","Macarena Zambrano","Julia Puig","Florent Dufour","Clarice Groeneveld","Mingjun Shi","Claire Beraud","Myriam Lasalle","Elodie Chapeaublanc","Thierry Lebret","Philipe Lluel","Ana Maria Eiján","Lars Dyrskjøt","Mohamed Elati","François Radvanyi","Catalina Lodillinsky","Isabelle Bernard-Pierrot"],
"halId_s":"hal-04687147",
"docType_s":"UNDEFINED",
"producedDateY_i":2023
},{
"citationRef_s":"<i>Cellular and Molecular Life Sciences</i>, 2023, 80 (10), pp.299. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s00018-023-04959-6\">⟨10.1007/s00018-023-04959-6⟩</a>",
"citationFull_s":"Xue Wang, Junnan Liu, Anca Azoitei, Tim Eiseler, Sabine Meessen, et al.. Loss of ORP3 induces aneuploidy and promotes bladder cancer cell invasion through deregulated microtubule and actin dynamics. <i>Cellular and Molecular Life Sciences</i>, 2023, 80 (10), pp.299. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/s00018-023-04959-6\">⟨10.1007/s00018-023-04959-6⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04499717v1\">⟨hal-04499717⟩</a>",
"title_s":["Loss of ORP3 induces aneuploidy and promotes bladder cancer cell invasion through deregulated microtubule and actin dynamics"],
"authFullName_s":["Xue Wang","Junnan Liu","Anca Azoitei","Tim Eiseler","Sabine Meessen","Wencheng Jiang","Xi Zheng","Arika Makori","Markus Eckstein","Arndt Hartmann","Stephan Stilgenbauer","Mohamed Elati","Meike Hohwieler","Alexander Kleger","Axel John","Friedemann Zengerling","Felix Wezel","Christian Bolenz","Cagatay Günes"],
"halId_s":"hal-04499717",
"docType_s":"ART",
"producedDateY_i":2023
},{
"citationRef_s":"<i>25th international bladder cancer network</i>, IBCN, Sep 2022, Barcelona, Spain. pp.53",
"citationFull_s":"Geoffrey Pawlak, Julia Puig, Aurélien Dispot, Wajdi Dhifli, Mohamed Elati. BLCA-RegMap portal: a co-regulatory influence network view of bladder cancer heterogeneity. <i>25th international bladder cancer network</i>, IBCN, Sep 2022, Barcelona, Spain. pp.53. <a target=\"_blank\" href=\"https://hal.science/hal-04688644v1\">⟨hal-04688644⟩</a>",
"title_s":["BLCA-RegMap portal: a co-regulatory influence network view of bladder cancer heterogeneity"],
"authFullName_s":["Geoffrey Pawlak","Julia Puig","Aurélien Dispot","Wajdi Dhifli","Mohamed Elati"],
"halId_s":"hal-04688644",
"docType_s":"COMM",
"producedDateY_i":2022
},{
"citationRef_s":"<i>Mucins in health and Disease</i>, Jul 2022, Utrecht (Netherland), Netherlands",
"citationFull_s":"Nicolas Jonckheere, Julie Auwercx, Elsa Hadj Bachir, Lucie Coppin, Audrey Vincent, et al.. Bioinformatics identification of key regulators associated with MUC4 expression in pancreatic adenocarcinoma.. <i>Mucins in health and Disease</i>, Jul 2022, Utrecht (Netherland), Netherlands. <a target=\"_blank\" href=\"https://hal.science/hal-04465160v1\">⟨hal-04465160⟩</a>",
"title_s":["Bioinformatics identification of key regulators associated with MUC4 expression in pancreatic adenocarcinoma."],
"authFullName_s":["Nicolas Jonckheere","Julie Auwercx","Elsa Hadj Bachir","Lucie Coppin","Audrey Vincent","Bernadette Neve","Mohamed Elati","Isabelle van Seuningen"],
"halId_s":"hal-04465160",
"docType_s":"POSTER",
"producedDateY_i":2022
},{
"citationRef_s":"<i>Revue du Rhumatisme</i>, 2021, 88, pp.A151. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.rhum.2021.10.238\">⟨10.1016/j.rhum.2021.10.238⟩</a>",
"citationFull_s":"Q. Miagoux, V. Singh, D.M. Dereck, V. Chaudru, Mohamed Elati, et al.. De la création d’un réseau intégratif spécifique de la polyarthrite rhumatoïde à l’étude d’un modèle personnalisé relié au traitement des patients. <i>Revue du Rhumatisme</i>, 2021, 88, pp.A151. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.rhum.2021.10.238\">⟨10.1016/j.rhum.2021.10.238⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04504958v1\">⟨hal-04504958⟩</a>",
"title_s":["De la création d’un réseau intégratif spécifique de la polyarthrite rhumatoïde à l’étude d’un modèle personnalisé relié au traitement des patients"],
"authFullName_s":["Q. Miagoux","V. Singh","D.M. Dereck","V. Chaudru","Mohamed Elati","E. Teixeira","A. Niarakis"],
"halId_s":"hal-04504958",
"docType_s":"ART",
"producedDateY_i":2021
},{
"citationRef_s":"<i>Neuro-Oncology</i>, 2021, 23 (Supplement_2), pp.ii22-ii22. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/neuonc/noab180.072\">⟨10.1093/neuonc/noab180.072⟩</a>",
"citationFull_s":"M Messé, C Bernhard, M Mercier, Q Fuchs, S Foppolo, et al.. P04.18 Heterogeneity and plasticity of integrin α5β1 expression in glioblastoma stem cells. <i>Neuro-Oncology</i>, 2021, 23 (Supplement_2), pp.ii22-ii22. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/neuonc/noab180.072\">⟨10.1093/neuonc/noab180.072⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04499744v1\">⟨hal-04499744⟩</a>",
"title_s":["P04.18 Heterogeneity and plasticity of integrin α5β1 expression in glioblastoma stem cells"],
"authFullName_s":["M Messé","C Bernhard","M Mercier","Q Fuchs","S Foppolo","C Herold-Mende","I Namer","C Bund","Mohamed Elati","N Entz-Werlé","M Dontenwill"],
"halId_s":"hal-04499744",
"docType_s":"ART",
"producedDateY_i":2021
},{
"citationRef_s":"<i>Journal of Bioinformatics and Computational Biology</i>, 2021, 19 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1142/S0219720021400035\">⟨10.1142/S0219720021400035⟩</a>",
"citationFull_s":"Magali Champion, Julien Chiquet, Pierre Neuvial, Mohamed Elati, François Radvanyi, et al.. Identification of Deregulated Mechanisms Specific to Bladder Cancer Subtypes. <i>Journal of Bioinformatics and Computational Biology</i>, 2021, 19 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1142/S0219720021400035\">⟨10.1142/S0219720021400035⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03079966v1\">⟨hal-03079966⟩</a>",
"title_s":["Identification of Deregulated Mechanisms Specific to Bladder Cancer Subtypes"],
"authFullName_s":["Magali Champion","Julien Chiquet","Pierre Neuvial","Mohamed Elati","François Radvanyi","Etienne E. Birmelé"],
"halId_s":"hal-03079966",
"docType_s":"ART",
"producedDateY_i":2021
},{
"citationRef_s":"<i>Journal of Personalized Medicine</i>, 2021, 11 (8), pp.785. <a target=\"_blank\" href=\"https://dx.doi.org/10.3390/jpm11080785\">⟨10.3390/jpm11080785⟩</a>",
"citationFull_s":"Quentin Miagoux, Vidisha Singh, Dereck de Mézquita, Valérie Chaudru, Mohamed Elati, et al.. Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map. <i>Journal of Personalized Medicine</i>, 2021, 11 (8), pp.785. <a target=\"_blank\" href=\"https://dx.doi.org/10.3390/jpm11080785\">⟨10.3390/jpm11080785⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03515663v1\">⟨hal-03515663⟩</a>",
"title_s":["Inference of an Integrative, Executable Network for Rheumatoid Arthritis Combining Data-Driven Machine Learning Approaches and a State-of-the-Art Mechanistic Disease Map"],
"authFullName_s":["Quentin Miagoux","Vidisha Singh","Dereck de Mézquita","Valérie Chaudru","Mohamed Elati","Elisabeth Petit-Teixeira","Anna Niarakis"],
"halId_s":"hal-03515663",
"docType_s":"ART",
"producedDateY_i":2021
},{
"citationRef_s":"<i>IEEE BigData</i>, 2020, pp.892-897. <a target=\"_blank\" href=\"https://dx.doi.org/10.1109/BigData50022.2020.9378323\">⟨10.1109/BigData50022.2020.9378323⟩</a>",
"citationFull_s":"Ali Assi, Mohamed Elati, Wajdi Dhifli. Instance Matching in Knowledge Graphs Through Dynamic, Distributed and Affinity-Preserving Random Walk. <i>IEEE BigData</i>, 2020, pp.892-897. <a target=\"_blank\" href=\"https://dx.doi.org/10.1109/BigData50022.2020.9378323\">⟨10.1109/BigData50022.2020.9378323⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04509036v1\">⟨hal-04509036⟩</a>",
"title_s":["Instance Matching in Knowledge Graphs Through Dynamic, Distributed and Affinity-Preserving Random Walk"],
"authFullName_s":["Ali Assi","Mohamed Elati","Wajdi Dhifli"],
"halId_s":"hal-04509036",
"docType_s":"ART",
"producedDateY_i":2020
},{
"citationRef_s":"<i>Scientific Reports</i>, 2020, 10 (1), pp.16236. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41598-020-73147-4\">⟨10.1038/s41598-020-73147-4⟩</a>",
"citationFull_s":"Naouel Zerrouk, Quentin Miagoux, Aurelien Dispot, Mohamed Elati, Anna Niarakis. Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference. <i>Scientific Reports</i>, 2020, 10 (1), pp.16236. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41598-020-73147-4\">⟨10.1038/s41598-020-73147-4⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02958928v1\">⟨hal-02958928⟩</a>",
"title_s":["Identification of putative master regulators in rheumatoid arthritis synovial fibroblasts using gene expression data and network inference"],
"authFullName_s":["Naouel Zerrouk","Quentin Miagoux","Aurelien Dispot","Mohamed Elati","Anna Niarakis"],
"halId_s":"hal-02958928",
"docType_s":"ART",
"producedDateY_i":2020
},{
"citationRef_s":"<i>Proceedings of the 12th International Conference on Bioinformatics and Computational Biology</i>, Mar 2020, SAN FRANCISCO, United States. pp.1--10, <a target=\"_blank\" href=\"https://dx.doi.org/10.29007/v7qj\">⟨10.29007/v7qj⟩</a>",
"citationFull_s":"Magali Champion, Julien Chiquet, Pierre Neuvial, Mohamed Elati, François Radvanyi, et al.. Identification of deregulated transcription factors involved in subtypes of cancers. <i>Proceedings of the 12th International Conference on Bioinformatics and Computational Biology</i>, Mar 2020, SAN FRANCISCO, United States. pp.1--10, <a target=\"_blank\" href=\"https://dx.doi.org/10.29007/v7qj\">⟨10.29007/v7qj⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01516892v2\">⟨hal-01516892v2⟩</a>",
"title_s":["Identification of deregulated transcription factors involved in subtypes of cancers"],
"authFullName_s":["Magali Champion","Julien Chiquet","Pierre Neuvial","Mohamed Elati","François Radvanyi","Etienne E. Birmelé"],
"halId_s":"hal-01516892",
"docType_s":"COMM",
"producedDateY_i":2020
},{
"citationRef_s":"<i>Information Sciences</i>, 2020, 509, pp.501-514. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.ins.2018.09.053\">⟨10.1016/j.ins.2018.09.053⟩</a>",
"citationFull_s":"Wajdi Dhifli, Nour El Islem Karabadji, Mohamed Elati. Evolutionary mining of skyline clusters of attributed graph data. <i>Information Sciences</i>, 2020, 509, pp.501-514. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.ins.2018.09.053\">⟨10.1016/j.ins.2018.09.053⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04499731v1\">⟨hal-04499731⟩</a>",
"title_s":["Evolutionary mining of skyline clusters of attributed graph data"],
"authFullName_s":["Wajdi Dhifli","Nour El Islem Karabadji","Mohamed Elati"],
"halId_s":"hal-04499731",
"docType_s":"ART",
"producedDateY_i":2020
},{
"citationRef_s":"<i>Saudi Journal of Kidney Diseases and Transplantation </i>, 2020, 31 (1), pp.129. <a target=\"_blank\" href=\"https://dx.doi.org/10.4103/1319-2442.279932\">⟨10.4103/1319-2442.279932⟩</a>",
"citationFull_s":"Zohra El Ati, Hanene Machfar, Hamza Boussafa, Nidhal Ati, Olfaben Omrane Sioud, et al.. Metabolic syndrome, malnutrition, and its associations with cardiovascular and all-cause mortality in hemodialysis patients: Follow-up for three years. <i>Saudi Journal of Kidney Diseases and Transplantation </i>, 2020, 31 (1), pp.129. <a target=\"_blank\" href=\"https://dx.doi.org/10.4103/1319-2442.279932\">⟨10.4103/1319-2442.279932⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04508913v1\">⟨hal-04508913⟩</a>",
"title_s":["Metabolic syndrome, malnutrition, and its associations with cardiovascular and all-cause mortality in hemodialysis patients: Follow-up for three years"],
"authFullName_s":["Zohra El Ati","Hanene Machfar","Hamza Boussafa","Nidhal Ati","Olfaben Omrane Sioud","Baha Zantour","Hassen Bouzidi","Mohamed Elati"],
"halId_s":"hal-04508913",
"docType_s":"ART",
"producedDateY_i":2020
},{
"citationRef_s":"<i>BMC Bioinformatics</i>, 2019, 19 (S13), pp.466. <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12859-018-2481-y\">⟨10.1186/s12859-018-2481-y⟩</a>",
"citationFull_s":"Wajdi Dhifli, Julia Puig, Aurélien Dispot, Mohamed Elati. Latent network-based representations for large-scale gene expression data analysis. <i>BMC Bioinformatics</i>, 2019, 19 (S13), pp.466. <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12859-018-2481-y\">⟨10.1186/s12859-018-2481-y⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04509116v1\">⟨hal-04509116⟩</a>",
"title_s":["Latent network-based representations for large-scale gene expression data analysis"],
"authFullName_s":["Wajdi Dhifli","Julia Puig","Aurélien Dispot","Mohamed Elati"],
"halId_s":"hal-04509116",
"docType_s":"ART",
"producedDateY_i":2019
},{
"citationRef_s":"<i>Proceedings of the National Academy of Sciences of the United States of America</i>, 2019, 116 (36), pp.18142-18147. <a target=\"_blank\" href=\"https://dx.doi.org/10.1073/pnas.1900548116\">⟨10.1073/pnas.1900548116⟩</a>",
"citationFull_s":"Anthony Coutant, Katherine Roper, Daniel Trejo-Banos, Dominique Bouthinon, Martin Carpenter, et al.. Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast. <i>Proceedings of the National Academy of Sciences of the United States of America</i>, 2019, 116 (36), pp.18142-18147. <a target=\"_blank\" href=\"https://dx.doi.org/10.1073/pnas.1900548116\">⟨10.1073/pnas.1900548116⟩</a>. <a target=\"_blank\" href=\"https://hal.sorbonne-universite.fr/hal-02297702v1\">⟨hal-02297702⟩</a>",
"title_s":["Closed-loop cycles of experiment design, execution, and learning accelerate systems biology model development in yeast"],
"authFullName_s":["Anthony Coutant","Katherine Roper","Daniel Trejo-Banos","Dominique Bouthinon","Martin Carpenter","Jacek Grzebyta","Guillaume Santini","Henry Soldano","Mohamed Elati","Jan Ramon","Céline Rouveirol","Larisa N Soldatova","Ross D King"],
"halId_s":"hal-02297702",
"docType_s":"ART",
"producedDateY_i":2019
},{
"citationRef_s":"<i>10th International Workshop on Bio-Design Automation</i>, Bio-Design Automation Consortium (BDAC), Jul 2018, Berkeley (CA), United States",
"citationFull_s":"Pauline Trébulle, Jean-Marc Nicaud, Mohamed Elati. CoRegCAD : a framework from regulatory network to metabolic engineering. <i>10th International Workshop on Bio-Design Automation</i>, Bio-Design Automation Consortium (BDAC), Jul 2018, Berkeley (CA), United States. <a target=\"_blank\" href=\"https://hal.science/hal-04687238v1\">⟨hal-04687238⟩</a>",
"title_s":["CoRegCAD : a framework from regulatory network to metabolic engineering"],
"authFullName_s":["Pauline Trébulle","Jean-Marc Nicaud","Mohamed Elati"],
"halId_s":"hal-04687238",
"docType_s":"COMM",
"producedDateY_i":2018
},{
"citationRef_s":"<i>Applied Soft Computing</i>, 2018, 65, pp.91 - 100. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.asoc.2017.12.036\">⟨10.1016/j.asoc.2017.12.036⟩</a>",
"citationFull_s":"Alejandro Lopez-Rincon, Alberto Tonda, Mohamed Elati, Olivier Schwander, Benjamin Piwowarski, et al.. Evolutionary optimization of convolutional neural networks for cancer miRNA biomarkers classification. <i>Applied Soft Computing</i>, 2018, 65, pp.91 - 100. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.asoc.2017.12.036\">⟨10.1016/j.asoc.2017.12.036⟩</a>. <a target=\"_blank\" href=\"https://hal.sorbonne-universite.fr/hal-01700622v1\">⟨hal-01700622⟩</a>",
"title_s":["Evolutionary optimization of convolutional neural networks for cancer miRNA biomarkers classification"],
"authFullName_s":["Alejandro Lopez-Rincon","Alberto Tonda","Mohamed Elati","Olivier Schwander","Benjamin Piwowarski","Patrick Gallinari"],
"halId_s":"hal-01700622",
"docType_s":"ART",
"producedDateY_i":2018
},{
"citationRef_s":"<i>BMC Systems Biology</i>, 2017, 11 (S7), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12918-017-0507-0\">⟨10.1186/s12918-017-0507-0⟩</a>",
"citationFull_s":"Mohamed Elati, Daniel Trejo Banos, Pauline Trébulle. Integrating transcriptional activity in genome-scale models of metabolism. <i>BMC Systems Biology</i>, 2017, 11 (S7), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12918-017-0507-0\">⟨10.1186/s12918-017-0507-0⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01730100v1\">⟨hal-01730100⟩</a>",
"title_s":["Integrating transcriptional activity in genome-scale models of metabolism"],
"authFullName_s":["Mohamed Elati","Daniel Trejo Banos","Pauline Trébulle"],
"halId_s":"hal-01730100",
"docType_s":"ART",
"producedDateY_i":2017
},{
"citationRef_s":"<i>npj Systems Biology and Applications</i>, 2017, 3 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41540-017-0024-1\">⟨10.1038/s41540-017-0024-1⟩</a>",
"citationFull_s":"Pauline Trébulle, Jean-Marc Nicaud, Christophe Leplat, Mohamed Elati. Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica. <i>npj Systems Biology and Applications</i>, 2017, 3 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41540-017-0024-1\">⟨10.1038/s41540-017-0024-1⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01714837v1\">⟨hal-01714837⟩</a>",
"title_s":["Inference and interrogation of a coregulatory network in the context of lipid accumulation in Yarrowia lipolytica"],
"authFullName_s":["Pauline Trébulle","Jean-Marc Nicaud","Christophe Leplat","Mohamed Elati"],
"halId_s":"hal-01714837",
"docType_s":"ART",
"producedDateY_i":2017
},{
"citationRef_s":"<i>16. International Conference on Bioinformatics (InCoB 2017)</i>, University of Technology Sydney (UTS). AUS.; Tsinghua University. CHN.; Asia Pacific Bioinformatics Network (APBioNet)., Sep 2017, Shenzhen, China. 174 p., <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12918-017-0507-0\">⟨10.1186/s12918-017-0507-0⟩</a>",
"citationFull_s":"Daniel Trejo Banos, Pauline Trebulle, Mohamed Elati. Integrating transcriptional activity in genome-scale models of metabolism. <i>16. International Conference on Bioinformatics (InCoB 2017)</i>, University of Technology Sydney (UTS). AUS.; Tsinghua University. CHN.; Asia Pacific Bioinformatics Network (APBioNet)., Sep 2017, Shenzhen, China. 174 p., <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12918-017-0507-0\">⟨10.1186/s12918-017-0507-0⟩</a>. <a target=\"_blank\" href=\"https://hal.inrae.fr/hal-02738237v1\">⟨hal-02738237⟩</a>",
"title_s":["Integrating transcriptional activity in genome-scale models of metabolism"],
"authFullName_s":["Daniel Trejo Banos","Pauline Trebulle","Mohamed Elati"],
"halId_s":"hal-02738237",
"docType_s":"COMM",
"producedDateY_i":2017
},{
"citationRef_s":"<i>2017 IEEE Congress on Evolutionary Computation (CEC)</i>, Jun 2017, Donostia, France. <a target=\"_blank\" href=\"https://dx.doi.org/10.1109/CEC.2017.7969559\">⟨10.1109/CEC.2017.7969559⟩</a>",
"citationFull_s":"Wajdi Dhifli, Noemie Oliveira da Costa, Mohamed Elati. An evolutionary schema for mining skyline clusters of attributed graph data. <i>2017 IEEE Congress on Evolutionary Computation (CEC)</i>, Jun 2017, Donostia, France. <a target=\"_blank\" href=\"https://dx.doi.org/10.1109/CEC.2017.7969559\">⟨10.1109/CEC.2017.7969559⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01714838v1\">⟨hal-01714838⟩</a>",
"title_s":["An evolutionary schema for mining skyline clusters of attributed graph data"],
"authFullName_s":["Wajdi Dhifli","Noemie Oliveira da Costa","Mohamed Elati"],
"halId_s":"hal-01714838",
"docType_s":"COMM",
"producedDateY_i":2017
},{
"citationRef_s":"Informatique [cs]. Université d'Évry Val d'Essonne, 2016",
"citationFull_s":"Mohamed Elati. Inference, Interrogation and Implementation of Biological Networks. Informatique [cs]. Université d'Évry Val d'Essonne, 2016. <a target=\"_blank\" href=\"https://theses.hal.science/tel-04687192v1\">⟨tel-04687192⟩</a>",
"title_s":["Inference, Interrogation and Implementation of Biological Networks"],
"authFullName_s":["Mohamed Elati"],
"halId_s":"tel-04687192",
"docType_s":"HDR",
"producedDateY_i":2016
},{
"citationRef_s":"<i>BMC Bioinformatics</i>, 2016, 17 (S5), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12859-016-1047-0\">⟨10.1186/s12859-016-1047-0⟩</a>",
"citationFull_s":"Costas Bouyioukos, Mohamed Elati, François Képès. Analysis tools for the interplay between genome layout and regulation. <i>BMC Bioinformatics</i>, 2016, 17 (S5), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12859-016-1047-0\">⟨10.1186/s12859-016-1047-0⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01714839v1\">⟨hal-01714839⟩</a>",
"title_s":["Analysis tools for the interplay between genome layout and regulation"],
"authFullName_s":["Costas Bouyioukos","Mohamed Elati","François Képès"],
"halId_s":"hal-01714839",
"docType_s":"ART",
"producedDateY_i":2016
},{
"citationRef_s":"<i>16e Journées des Connaissances (EGC 2016)</i>, Jan 2016, Reims, France. pp.40, 2016",
"citationFull_s":"Etienne E. Birmelé, Mohamed Elati, Blaise Hanczar, Lydia Boudjeloud-Assala. Atelier Grands Graphes et Bioinformatique. <i>16e Journées des Connaissances (EGC 2016)</i>, Jan 2016, Reims, France. pp.40, 2016. <a target=\"_blank\" href=\"https://hal.science/hal-03122986v1\">⟨hal-03122986⟩</a>",
"title_s":["Atelier Grands Graphes et Bioinformatique"],
"authFullName_s":["Etienne E. Birmelé","Mohamed Elati","Blaise Hanczar","Lydia Boudjeloud-Assala"],
"halId_s":"hal-03122986",
"docType_s":"PROCEEDINGS",
"producedDateY_i":2016
},{
"citationRef_s":"<i>BMC Systems Biology</i>, 2015, 9, <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/1752-0509-9-S6-S6\">⟨10.1186/1752-0509-9-S6-S6⟩</a>",
"citationFull_s":"Thomas Picchetti, Julien Chiquet, Mohamed Elati, Pierre Neuvial, Rémy Nicolle, et al.. A model for gene deregulation detection using expression data. <i>BMC Systems Biology</i>, 2015, 9, <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/1752-0509-9-S6-S6\">⟨10.1186/1752-0509-9-S6-S6⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-01154154v2\">⟨hal-01154154v2⟩</a>",
"title_s":["A model for gene deregulation detection using expression data"],
"authFullName_s":["Thomas Picchetti","Julien Chiquet","Mohamed Elati","Pierre Neuvial","Rémy Nicolle","Etienne E. Birmelé"],
"halId_s":"hal-01154154",
"docType_s":"ART",
"producedDateY_i":2015
},{
"citationRef_s":"<i>Bioinformatics</i>, 2015, 31 (18), pp.3066-3068. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btv305\">⟨10.1093/bioinformatics/btv305⟩</a>",
"citationFull_s":"Rémy Nicolle, François Radvanyi, Mohamed Elati. C o R eg N et : reconstruction and integrated analysis of co-regulatory networks. <i>Bioinformatics</i>, 2015, 31 (18), pp.3066-3068. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btv305\">⟨10.1093/bioinformatics/btv305⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-05093981v1\">⟨hal-05093981⟩</a>",
"title_s":["C o R eg N et : reconstruction and integrated analysis of co-regulatory networks"],
"authFullName_s":["Rémy Nicolle","François Radvanyi","Mohamed Elati"],
"halId_s":"hal-05093981",
"docType_s":"ART",
"producedDateY_i":2015
},{
"citationRef_s":"<i>PLoS ONE</i>, 2014, 9 (12), pp.e114401. <a target=\"_blank\" href=\"https://dx.doi.org/10.1371/journal.pone.0114401\">⟨10.1371/journal.pone.0114401⟩</a>",
"citationFull_s":"Talleh Almelli, Grégory Nuel, Emmanuel Bischoff, Agnès Aubouy, Mohamed Elati, et al.. Differences in Gene Transcriptomic Pattern of Plasmodium falciparum in Children with Cerebral Malaria and Asymptomatic Carriers. <i>PLoS ONE</i>, 2014, 9 (12), pp.e114401. <a target=\"_blank\" href=\"https://dx.doi.org/10.1371/journal.pone.0114401\">⟨10.1371/journal.pone.0114401⟩</a>. <a target=\"_blank\" href=\"https://ut3-toulouseinp.hal.science/hal-03272771v1\">⟨hal-03272771⟩</a>",
"title_s":["Differences in Gene Transcriptomic Pattern of Plasmodium falciparum in Children with Cerebral Malaria and Asymptomatic Carriers"],
"authFullName_s":["Talleh Almelli","Grégory Nuel","Emmanuel Bischoff","Agnès Aubouy","Mohamed Elati","Christian William Wang","Marie-Agnès Dillies","Jean-Yves J.-Y. Coppée","Georges Nko Ayissi","Leonardo Kishi Basco","Christophe Rogier","Nicaise Tuikue Ndam","Philippe Deloron","Rachida Tahar"],
"halId_s":"hal-03272771",
"docType_s":"ART",
"producedDateY_i":2014
},{
"citationRef_s":"<i>Bioinformatics</i>, 2014, 30 (23), pp.3419-3420. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btu517\">⟨10.1093/bioinformatics/btu517⟩</a>",
"citationFull_s":"C Winterhalter, Rémy Nicolle, A Louis, C To, François Radvanyi, et al.. Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks. <i>Bioinformatics</i>, 2014, 30 (23), pp.3419-3420. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btu517\">⟨10.1093/bioinformatics/btu517⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-05093957v1\">⟨hal-05093957⟩</a>",
"title_s":["Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks"],
"authFullName_s":["C Winterhalter","Rémy Nicolle","A Louis","C To","François Radvanyi","M Elati"],
"halId_s":"hal-05093957",
"docType_s":"ART",
"producedDateY_i":2014
},{
"citationRef_s":"2009",
"citationFull_s":"Khalid Benabdeslem, Mohamed Elati, Rushed Kanawati, Hamamache Kheddouci, Céline Rouveirol. Apprentissage et Graphes pour les Systèmes complexes. 2009. <a target=\"_blank\" href=\"https://hal.science/hal-00384446v1\">⟨hal-00384446⟩</a>",
"title_s":["Apprentissage et Graphes pour les Systèmes complexes"],
"authFullName_s":["Khalid Benabdeslem","Mohamed Elati","Rushed Kanawati","Hamamache Kheddouci","Céline Rouveirol"],
"halId_s":"hal-00384446",
"docType_s":"OTHER",
"producedDateY_i":2009
},{
"citationRef_s":"<i>BMC Proceedings</i>, 2008, 2 (4), pp.S4",
"citationFull_s":"Etienne Birmele, Mohamed Elati, Céline Rouveirol, Christophe Ambroise. Identification of functional modules based on transcriptional regulation structure. <i>BMC Proceedings</i>, 2008, 2 (4), pp.S4. <a target=\"_blank\" href=\"https://hal.science/hal-00730904v1\">⟨hal-00730904⟩</a>",
"title_s":["Identification of functional modules based on transcriptional regulation structure"],
"authFullName_s":["Etienne Birmele","Mohamed Elati","Céline Rouveirol","Christophe Ambroise"],
"halId_s":"hal-00730904",
"docType_s":"ART",
"producedDateY_i":2008
},{
"citationRef_s":"<i>Bioinformatics</i>, 2007, 23 (18), pp.2407-14. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btm352\">⟨10.1093/bioinformatics/btm352⟩</a>",
"citationFull_s":"Mohamed Elati, Pierre Neuvial, Monique Bolotin-Fukuhara, Emmanuel Barillot, François Radvanyi, et al.. LICORN: learning cooperative regulation networks from gene expression data.. <i>Bioinformatics</i>, 2007, 23 (18), pp.2407-14. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioinformatics/btm352\">⟨10.1093/bioinformatics/btm352⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-00192537v1\">⟨hal-00192537⟩</a>",
"title_s":["LICORN: learning cooperative regulation networks from gene expression data."],
"authFullName_s":["Mohamed Elati","Pierre Neuvial","Monique Bolotin-Fukuhara","Emmanuel Barillot","François Radvanyi","Céline Rouveirol"],
"halId_s":"hal-00192537",
"docType_s":"ART",
"producedDateY_i":2007
}]
}
}