Publications

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BioacPepFinder: Novel Bioinformatics Tool for the Discovery of Bioactive Peptides from Protein Digestion.. 4th International Conference on Food Bioactives & Health, Sep 2023, Prague, Czech Republic. <a target=\"_blank\" href=\"https://hal.science/hal-04548237\">⟨hal-04548237⟩</a>", "title_s":["BioacPepFinder: Novel Bioinformatics Tool for the Discovery of Bioactive Peptides from Protein Digestion."], "authFullName_s":["Carlos Bathich", "Isabelle Guigon", "Hélène Touzet", "Barbara Deracinois", "Laurence Guimas", "Rozenn Ravallec", "Christophe Flahaut"], "halId_s":"hal-04548237", "docType_s":"COMM", "producedDateY_i":2023}, { "citationRef_s":"Green Food Tech, May 2023, Montréal, Canada", "citationFull_s":"Carlos Bathich, Isabelle Guigon, Hélène Touzet, Barbara Deracinois, Laurence Guimas, et al.. BioacPepFinder: a pipeline for prediction of proteolysis-generated bioactive peptides usable for all protein sources.. Green Food Tech, May 2023, Montréal, Canada. <a target=\"_blank\" href=\"https://hal.science/hal-04547606\">⟨hal-04547606⟩</a>", "title_s":["BioacPepFinder: a pipeline for prediction of proteolysis-generated bioactive peptides usable for all protein sources."], "authFullName_s":["Carlos Bathich", "Isabelle Guigon", "Hélène Touzet", "Barbara Deracinois", "Laurence Guimas", "Arnaud Terninck", "Christophe Flahaut", "Rozenn Ravallec"], "halId_s":"hal-04547606", "docType_s":"POSTER", "producedDateY_i":2023}, { "citationRef_s":"2023", "citationFull_s":"Hélène Touzet, Mikaël Salson, Claire Lemaitre, Florence Débarre. Le SARS-CoV-2 : une expérience inédite de surveillance génomique mondiale. 2023. <a target=\"_blank\" href=\"https://inria.hal.science/hal-04155812\">⟨hal-04155812⟩</a>", "title_s":["Le SARS-CoV-2 : une expérience inédite de surveillance génomique mondiale"], "authFullName_s":["Hélène Touzet", "Mikaël Salson", "Claire Lemaitre", "Florence Débarre"], "halId_s":"hal-04155812", "docType_s":"BLOG", "producedDateY_i":2023}, { "citationRef_s":"2022", "citationFull_s":"Quentin Bonenfant, Laurent Noé, Hélène Touzet. Porechop_ABI: discovering unknown adapters in ONT sequencing reads for downstream trimming. 2022. <a target=\"_blank\" href=\"https://hal.science/hal-03865464\">⟨hal-03865464⟩</a>", "title_s":["Porechop_ABI: discovering unknown adapters in ONT sequencing reads for downstream trimming"], "authFullName_s":["Quentin Bonenfant", "Laurent Noé", "Hélène Touzet"], "halId_s":"hal-03865464", "docType_s":"UNDEFINED", "producedDateY_i":2022}, { "citationRef_s":"Bioinformatics Advances, 2022, 3 (1), pp.vbac085. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioadv/vbac085\">⟨10.1093/bioadv/vbac085⟩</a>", "citationFull_s":"Quentin Bonenfant, Laurent Noé, Hélène Touzet. Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming. Bioinformatics Advances, 2022, 3 (1), pp.vbac085. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bioadv/vbac085\">⟨10.1093/bioadv/vbac085⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03932719\">⟨hal-03932719⟩</a>", "title_s":["Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming"], "authFullName_s":["Quentin Bonenfant", "Laurent Noé", "Hélène Touzet"], "halId_s":"hal-03932719", "docType_s":"ART", "producedDateY_i":2022}, { "citationRef_s":"Alejandro Pereira-Santana; Samuel David Gamboa-Tuz; Luis Carlos Rodríguez-Zapata. Plant Comparative Genomics, 2512, Springer; Humana, pp.103-120, 2022, Methods in Molecular Biology, 978-1-0716-2428-9. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/978-1-0716-2429-6_8\">⟨10.1007/978-1-0716-2429-6_8⟩</a>", "citationFull_s":"Sylvain Legrand, Isabelle Guigon, Hélène Touzet. Detecting MicroRNAs in Plant Genomes with miRkwood. Alejandro Pereira-Santana; Samuel David Gamboa-Tuz; Luis Carlos Rodríguez-Zapata. Plant Comparative Genomics, 2512, Springer; Humana, pp.103-120, 2022, Methods in Molecular Biology, 978-1-0716-2428-9. <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/978-1-0716-2429-6_8\">⟨10.1007/978-1-0716-2429-6_8⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03952910\">⟨hal-03952910⟩</a>", "title_s":["Detecting MicroRNAs in Plant Genomes with miRkwood"], "authFullName_s":["Sylvain Legrand", "Isabelle Guigon", "Hélène Touzet"], "halId_s":"hal-03952910", "docType_s":"COUV", "producedDateY_i":2022}, { "citationRef_s":"JOBIM, Jul 2022, Rennes, France", "citationFull_s":"Carlos Bathich, Isabelle Guigon, Hélène Touzet, Barbara Deracinois, Laurence Guimas, et al.. BioacPepFinder: Discovery of bioactive peptides from protein digestion.. JOBIM, Jul 2022, Rennes, France. <a target=\"_blank\" href=\"https://hal.science/hal-04547613\">⟨hal-04547613⟩</a>", "title_s":["BioacPepFinder: Discovery of bioactive peptides from protein digestion."], "authFullName_s":["Carlos Bathich", "Isabelle Guigon", "Hélène Touzet", "Barbara Deracinois", "Laurence Guimas", "Arnaud Terninck", "Rozenn Ravallec", "Christophe Flahaut"], "halId_s":"hal-04547613", "docType_s":"POSTER", "producedDateY_i":2022}, { "citationRef_s":"4. International Ewinia workshop (IEW), Jul 2022, Assise, Italy", "citationFull_s":"Julie Baltenneck, Ben Moussa, Loïc Couderc, Areski Flissi, Jacques Pédron, et al.. Tn-phyto: essential genomes of nine bacterial phytopathogens. 4. International Ewinia workshop (IEW), Jul 2022, Assise, Italy. <a target=\"_blank\" href=\"https://hal.science/hal-03721522\">⟨hal-03721522⟩</a>", "title_s":["Tn-phyto: essential genomes of nine bacterial phytopathogens"], "authFullName_s":["Julie Baltenneck", "Ben Moussa", "Loïc Couderc", "Areski Flissi", "Jacques Pédron", "Cindy E. Morris", "Marie-Anne Barny", "Odile Berge", "Hélène Touzet", "Erwan Gueguen", "Guy Condemine"], "halId_s":"hal-03721522", "docType_s":"POSTER", "producedDateY_i":2022}, { "citationRef_s":"One Health International Days, Jun 2022, Villeneuve d’Ascq, France", "citationFull_s":"Carlos Bathich, Isabelle Guigon, Hélène Touzet, Barbara Deracinois, Laurence Guimas, et al.. BioacPepFinder: Discovery of bioactive peptides from protein digestion.. One Health International Days, Jun 2022, Villeneuve d’Ascq, France. <a target=\"_blank\" href=\"https://hal.science/hal-04547618\">⟨hal-04547618⟩</a>", "title_s":["BioacPepFinder: Discovery of bioactive peptides from protein digestion."], "authFullName_s":["Carlos Bathich", "Isabelle Guigon", "Hélène Touzet", "Barbara Deracinois", "Laurence Guimas", "Arnaud Terninck", "Rozenn Ravallec", "Christophe Flahaut"], "halId_s":"hal-04547618", "docType_s":"POSTER", "producedDateY_i":2022}, { "citationRef_s":"2022", "citationFull_s":"Claire Lemaitre, Mikaël Salson, Hélène Touzet. Comment la bioinformatique a résolu le puzzle du génome du SARS-CoV-2. 2022. <a target=\"_blank\" href=\"https://inria.hal.science/hal-03896532\">⟨hal-03896532⟩</a>", "title_s":["Comment la bioinformatique a résolu le puzzle du génome du SARS-CoV-2"], "authFullName_s":["Claire Lemaitre", "Mikaël Salson", "Hélène Touzet"], "halId_s":"hal-03896532", "docType_s":"BLOG", "producedDateY_i":2022}, { "citationRef_s":"2022", "citationFull_s":"Hélène Touzet, Mikaël Salson, Claire Lemaitre. Décoder le génome : vers la compréhension du fonctionnement du SARS-CoV-2. 2022. <a target=\"_blank\" href=\"https://inria.hal.science/hal-03750389\">⟨hal-03750389⟩</a>", "title_s":["Décoder le génome : vers la compréhension du fonctionnement du SARS-CoV-2"], "authFullName_s":["Hélène Touzet", "Mikaël Salson", "Claire Lemaitre"], "halId_s":"hal-03750389", "docType_s":"BLOG", "producedDateY_i":2022}, { "citationRef_s":"2022, <a target=\"_blank\" style=\"word-break: break-all;\" href=\"https://archive.softwareheritage.org/browse/swh:1:dir:5a4d461bfa0edddb5f36eda76bbc1eb93b32f26e;origin=https://hal.archives-ouvertes.fr/hal-04441970;visit=swh:1:snp:dccee2e5c5a988bcc927a55dd922c7ba6eca4a46;anchor=swh:1:rel:a832b435ac7524297ea6f2105444ca86e82f22db;path=/\">⟨swh:1:dir:5a4d461bfa0edddb5f36eda76bbc1eb93b32f26e;origin=https://hal.archives-ouvertes.fr/hal-04441970;visit=swh:1:snp:dccee2e5c5a988bcc927a55dd922c7ba6eca4a46;anchor=swh:1:rel:a832b435ac7524297ea6f2105444ca86e82f22db;path=/⟩</a>", "citationFull_s":"Hélène Touzet, Areski Flissi, Loïc Couderc. TnSeek. 2022, <a target=\"_blank\" style=\"word-break: break-all;\" href=\"https://archive.softwareheritage.org/browse/swh:1:dir:5a4d461bfa0edddb5f36eda76bbc1eb93b32f26e;origin=https://hal.archives-ouvertes.fr/hal-04441970;visit=swh:1:snp:dccee2e5c5a988bcc927a55dd922c7ba6eca4a46;anchor=swh:1:rel:a832b435ac7524297ea6f2105444ca86e82f22db;path=/\">⟨swh:1:dir:5a4d461bfa0edddb5f36eda76bbc1eb93b32f26e;origin=https://hal.archives-ouvertes.fr/hal-04441970;visit=swh:1:snp:dccee2e5c5a988bcc927a55dd922c7ba6eca4a46;anchor=swh:1:rel:a832b435ac7524297ea6f2105444ca86e82f22db;path=/⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04441970\">⟨hal-04441970⟩</a>", "title_s":["TnSeek"], "authFullName_s":["Hélène Touzet", "Areski Flissi", "Loïc Couderc"], "halId_s":"hal-04441970", "docType_s":"SOFTWARE", "producedDateY_i":2022}, { "citationRef_s":"Communications Biology, 2021, 4 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s42003-021-01794-y\">⟨10.1038/s42003-021-01794-y⟩</a>", "citationFull_s":"Matthieu Colpaert, Derifa Kadouche, Mathieu Ducatez, Trestan Pillonel, Carole Kebbi-Beghdadi, et al.. Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae. Communications Biology, 2021, 4 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s42003-021-01794-y\">⟨10.1038/s42003-021-01794-y⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03174571\">⟨hal-03174571⟩</a>", "title_s":["Conservation of the glycogen metabolism pathway underlines a pivotal function of storage polysaccharides in Chlamydiae"], "authFullName_s":["Matthieu Colpaert", "Derifa Kadouche", "Mathieu Ducatez", "Trestan Pillonel", "Carole Kebbi-Beghdadi", "Ugo Cenci", "Binquan Huang", "Malika Chabi", "Emmanuel Maes", "Bernadette Coddeville", "Loïc Couderc", "Hélène Touzet", "Fabrice Bray", "Catherine Tirtiaux", "Steven Ball", "Gilbert Greub", "Christophe Colleoni"], "halId_s":"hal-03174571", "docType_s":"ART", "producedDateY_i":2021}, { "citationRef_s":"[Research Report] CNRS. 2021, pp.1-35", "citationFull_s":"Samuel Alizon, Frédéric Cazals, Stéphane Guindon, Claire Lemaitre, Tristan Mary-Huard, et al.. SARS-CoV-2 Through the Lens of Computational Biology:\r\nHow bioinformatics is playing a key role in the study of the virus and its origins. [Research Report] CNRS. 2021, pp.1-35. <a target=\"_blank\" href=\"https://cnrs.hal.science/hal-03170023\">⟨hal-03170023⟩</a>", "title_s":["SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins"], "authFullName_s":["Samuel Alizon", "Frédéric Cazals", "Stéphane Guindon", "Claire Lemaitre", "Tristan Mary-Huard", "Anna Niarakis", "Mikaël Salson", "Celine Scornavacca", "Hélène Touzet"], "halId_s":"hal-03170023", "docType_s":"REPORT", "producedDateY_i":2021}, { "citationRef_s":"Nature Communications, 2021, 12, pp.116. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41467-020-20216-x\">⟨10.1038/s41467-020-20216-x⟩</a>", "citationFull_s":"Asma S. Khelifa, Cecilia Guillen Sanchez, Kevin M. Lesage, Ludovic Huot, Thomas Mouveaux, et al.. TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii. Nature Communications, 2021, 12, pp.116. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41467-020-20216-x\">⟨10.1038/s41467-020-20216-x⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03107529v2\">⟨hal-03107529v2⟩</a>", "title_s":["TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii"], "authFullName_s":["Asma S. Khelifa", "Cecilia Guillen Sanchez", "Kevin M. Lesage", "Ludovic Huot", "Thomas Mouveaux", "Pierre Péricard", "Nicolas Barois", "Hélène Touzet", "Guillemette Marot", "Emmanuel Roger", "Mathieu Gissot"], "halId_s":"hal-03107529", "docType_s":"ART", "producedDateY_i":2021}, { "citationRef_s":"Springer International Publishing, 12944, 2021, Lecture Notes in Computer Science, <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/978-3-030-86692-1\">⟨10.1007/978-3-030-86692-1⟩</a>", "citationFull_s":"Thierry Lecroq, Hélène Touzet. String Processing and Information Retrieval. Springer International Publishing, 12944, 2021, Lecture Notes in Computer Science, <a target=\"_blank\" href=\"https://dx.doi.org/10.1007/978-3-030-86692-1\">⟨10.1007/978-3-030-86692-1⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-03368750\">⟨hal-03368750⟩</a>", "title_s":["String Processing and Information Retrieval"], "authFullName_s":["Thierry Lecroq", "Hélène Touzet"], "halId_s":"hal-03368750", "docType_s":"OUV", "producedDateY_i":2021}, { "citationRef_s":"BioRxiv, 2020, BioRxiv, <a target=\"_blank\" href=\"https://dx.doi.org/10.1101/2020.06.02.131169\">⟨10.1101/2020.06.02.131169⟩</a>", "citationFull_s":"Matthieu Colpaert, Derifa Kadouche, Mathieu Ducatez, Trestan Pillonel, Carole Kebbi-Beghdadi, et al.. Substitution of nucleotide-sugar by trehalose-dependent glycogen synthesis pathways in Chlamydiales underlines an unusual requirement for storage polysaccharides within obligate intracellular bacteria. BioRxiv, 2020, BioRxiv, <a target=\"_blank\" href=\"https://dx.doi.org/10.1101/2020.06.02.131169\">⟨10.1101/2020.06.02.131169⟩</a>. <a target=\"_blank\" href=\"https://hal.univ-lille.fr/hal-03382208\">⟨hal-03382208⟩</a>", "title_s":["Substitution of nucleotide-sugar by trehalose-dependent glycogen synthesis pathways in Chlamydiales underlines an unusual requirement for storage polysaccharides within obligate intracellular bacteria"], "authFullName_s":["Matthieu Colpaert", "Derifa Kadouche", "Mathieu Ducatez", "Trestan Pillonel", "Carole Kebbi-Beghdadi", "Ugo Cenci", "Binquan Huang", "Malika Chabi", "Emmanuel Maes", "Coddeville Bernadette", "Loïc Couderc", "Hélène Touzet", "Fabrice Bray", "Catherine Tirtiaux", "Steven Ball", "Gilbert Greub", "Christophe Colleoni"], "halId_s":"hal-03382208", "docType_s":"ART", "producedDateY_i":2020}, { "citationRef_s":"Scientific Reports, 2020, 10 (1), pp.7316. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41598-020-64370-0\">⟨10.1038/s41598-020-64370-0⟩</a>", "citationFull_s":"Christophe Audebert, Franck Bonardi, Ségolène Caboche, Karine Guyot, Hélène Touzet, et al.. Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates. Scientific Reports, 2020, 10 (1), pp.7316. <a target=\"_blank\" href=\"https://dx.doi.org/10.1038/s41598-020-64370-0\">⟨10.1038/s41598-020-64370-0⟩</a>. <a target=\"_blank\" href=\"https://inserm.hal.science/inserm-02873228\">⟨inserm-02873228⟩</a>", "title_s":["Genetic basis for virulence differences of various Cryptosporidium parvum carcinogenic isolates"], "authFullName_s":["Christophe Audebert", "Franck Bonardi", "Ségolène Caboche", "Karine Guyot", "Hélène Touzet", "Sophie Merlin", "Nausicaa Gantois", "Colette Creusy", "Dionigia Meloni", "Anthony Mouray", "Eric Viscogliosi", "Gabriela Certad", "Sadia Benamrouz-Vanneste", "Magali Chabé"], "halId_s":"inserm-02873228", "docType_s":"ART", "producedDateY_i":2020}, { "citationRef_s":"14emes rencontres plantes-bactéries, Jan 2020, Aussois, France", "citationFull_s":"Matthieu Duban, Maude Pupin, Areski Flissi, L. Couderc, Hélène Touzet, et al.. Genome mining for screening and characterization of new lipopeptides with biocontrol applications.. 14emes rencontres plantes-bactéries, Jan 2020, Aussois, France. <a target=\"_blank\" href=\"https://hal.science/hal-04547627\">⟨hal-04547627⟩</a>", "title_s":["Genome mining for screening and characterization of new lipopeptides with biocontrol applications."], "authFullName_s":["Matthieu Duban", "Maude Pupin", "Areski Flissi", "L. Couderc", "Hélène Touzet", "Louis Meunier", "Denis Baurain", "Olumide Owolabi Omoboye", "Monica Höfte", "Alexandre Bricout", "Alice Rochex", "Mickaël Chevalier", "Christophe Flahaut", "Quassim Esmaël", "Essaid Ait Barka", "Philippe Jacques", "Valérie Leclère"], "halId_s":"hal-04547627", "docType_s":"POSTER", "producedDateY_i":2020}, { "citationRef_s":"Journal of Clinical Virology, 2020, 122, pp.104206. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.jcv.2019.104206\">⟨10.1016/j.jcv.2019.104206⟩</a>", "citationFull_s":"Delphine Beury, Léa Fléchon, Florence Maurier, Ségolène Caboche, Jean-Stéphane Varré, et al.. Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit. Journal of Clinical Virology, 2020, 122, pp.104206. <a target=\"_blank\" href=\"https://dx.doi.org/10.1016/j.jcv.2019.104206\">⟨10.1016/j.jcv.2019.104206⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02403094\">⟨hal-02403094⟩</a>", "title_s":["Use of whole-genome sequencing in the molecular investigation of care-associated HCoV-OC43 infections in a hematopoietic stem cell transplant unit"], "authFullName_s":["Delphine Beury", "Léa Fléchon", "Florence Maurier", "Ségolène Caboche", "Jean-Stéphane Varré", "Helene Touzet", "Jean Dubuisson", "David Hot", "Benoît Guéry", "Anne Goffard"], "halId_s":"hal-02403094", "docType_s":"ART", "producedDateY_i":2020}, { "citationRef_s":"2020, <a target=\"_blank\" style=\"word-break: break-all;\" href=\"https://archive.softwareheritage.org/browse/swh:1:dir:0f3941e6a5eff88655189dc1879650a85ecb22c0;origin=https://github.com/bonsai-team/Porechop_ABI;visit=swh:1:snp:5b8452d627bc6b045f99ba265dc36877edb019ea;anchor=swh:1:rev:0bc9f17f31d4ec1dcbab4796871cc09324cc143b\">⟨swh:1:dir:0f3941e6a5eff88655189dc1879650a85ecb22c0;origin=https://github.com/bonsai-team/Porechop_ABI;visit=swh:1:snp:5b8452d627bc6b045f99ba265dc36877edb019ea;anchor=swh:1:rev:0bc9f17f31d4ec1dcbab4796871cc09324cc143b⟩</a>", "citationFull_s":"Quentin Bonenfant, Laurent Noé, Hélène Touzet. Porechop_ABI. 2020, <a target=\"_blank\" style=\"word-break: break-all;\" href=\"https://archive.softwareheritage.org/browse/swh:1:dir:0f3941e6a5eff88655189dc1879650a85ecb22c0;origin=https://github.com/bonsai-team/Porechop_ABI;visit=swh:1:snp:5b8452d627bc6b045f99ba265dc36877edb019ea;anchor=swh:1:rev:0bc9f17f31d4ec1dcbab4796871cc09324cc143b\">⟨swh:1:dir:0f3941e6a5eff88655189dc1879650a85ecb22c0;origin=https://github.com/bonsai-team/Porechop_ABI;visit=swh:1:snp:5b8452d627bc6b045f99ba265dc36877edb019ea;anchor=swh:1:rev:0bc9f17f31d4ec1dcbab4796871cc09324cc143b⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-04490240\">⟨hal-04490240⟩</a>", "title_s":["Porechop_ABI"], "authFullName_s":["Quentin Bonenfant", "Laurent Noé", "Hélène Touzet"], "halId_s":"hal-04490240", "docType_s":"SOFTWARE", "producedDateY_i":2020}, { "citationRef_s":"BMC Genomics, 2019, 20 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12864-019-5913-9\">⟨10.1186/s12864-019-5913-9⟩</a>", "citationFull_s":"Isabelle Guigon, Sylvain Legrand, Jean-Frédéric Berthelot, Sébastien Bini, Delphine Lanselle, et al.. miRkwood: a tool for the reliable identification of microRNAs in plant genomes. BMC Genomics, 2019, 20 (1), <a target=\"_blank\" href=\"https://dx.doi.org/10.1186/s12864-019-5913-9\">⟨10.1186/s12864-019-5913-9⟩</a>. <a target=\"_blank\" href=\"https://hal.science/hal-02265367\">⟨hal-02265367⟩</a>", "title_s":["miRkwood: a tool for the reliable identification of microRNAs in plant genomes"], "authFullName_s":["Isabelle Guigon", "Sylvain Legrand", "Jean-Frédéric Berthelot", "Sébastien Bini", "Delphine Lanselle", "Mohcen Benmounah", "Hélène Touzet"], "halId_s":"hal-02265367", "docType_s":"ART", "producedDateY_i":2019}, { "citationRef_s":"Briefings in Bioinformatics, 2019, pp.1-18. <a target=\"_blank\" href=\"https://dx.doi.org/10.1093/bib/bbz058\">⟨10.1093/bib/bbz058⟩</a>", "citationFull_s":"Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne da Silva, Benjamin Istace, et al.. Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. 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Journal of Functional Programming, 2001, 11 (1), pp.33-53. <a target=\"_blank\" href=\"https://inria.hal.science/inria-00100819\">⟨inria-00100819⟩</a>", "title_s":["Algorithms with Polynomial Interpretation Termination Proof"], "authFullName_s":["Guillaume Bonfante", "Adam Cichon", "Jean-Yves Marion", "Helene Touzet"], "halId_s":"inria-00100819", "docType_s":"ART", "producedDateY_i":2001}, { "citationRef_s":"International Symposium on the Mathematical Foundations of Computer Science - MFCS'98, Aug 1998, Brno, Czech Republic, pp.267-276", "citationFull_s":"Hélène Touzet. Encoding the Hydra battle as a rewrite system. International Symposium on the Mathematical Foundations of Computer Science - MFCS'98, Aug 1998, Brno, Czech Republic, pp.267-276. <a target=\"_blank\" href=\"https://inria.hal.science/inria-00098575\">⟨inria-00098575⟩</a>", "title_s":["Encoding the Hydra battle as a rewrite system"], "authFullName_s":["Hélène Touzet"], "halId_s":"inria-00098575", "docType_s":"COMM", "producedDateY_i":1998}, { "citationRef_s":"International Colloquium on Automata, Languages, and Programming - ICALP'98, Jul 1998, Aalborg, Denmark, pp.507-517", "citationFull_s":"Hélène Touzet. A complex example of a simplifying rewrite system. International Colloquium on Automata, Languages, and Programming - ICALP'98, Jul 1998, Aalborg, Denmark, pp.507-517. <a target=\"_blank\" href=\"https://inria.hal.science/inria-00098574\">⟨inria-00098574⟩</a>", "title_s":["A complex example of a simplifying rewrite system"], "authFullName_s":["Hélène Touzet"], "halId_s":"inria-00098574", "docType_s":"COMM", "producedDateY_i":1998}, { "citationRef_s":"CSl'98, 1998, Brno, République Tchèque, pp.372-384", "citationFull_s":"Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet. Complexity classes and rewrite systems with polynomial interpretation. CSl'98, 1998, Brno, République Tchèque, pp.372-384. <a target=\"_blank\" href=\"https://inria.hal.science/inria-00098689\">⟨inria-00098689⟩</a>", "title_s":["Complexity classes and rewrite systems with polynomial interpretation"], "authFullName_s":["Guillaume Bonfante", "Adam Cichon", "Jean-Yves Marion", "Hélène Touzet"], "halId_s":"inria-00098689", "docType_s":"COMM", "producedDateY_i":1998}, { "citationRef_s":"Autre [cs.OH]. Université Henri Poincaré - Nancy 1, 1997. Français. <a target=\"_blank\" href=\"https://www.theses.fr/1997NAN10295\">⟨NNT : 1997NAN10295⟩</a>", "citationFull_s":"Hélène Touzet. Propriétés combinatoires pour la terminaison de systèmes de réécriture. Autre [cs.OH]. Université Henri Poincaré - Nancy 1, 1997. Français. <a target=\"_blank\" href=\"https://www.theses.fr/1997NAN10295\">⟨NNT : 1997NAN10295⟩</a>. <a target=\"_blank\" href=\"https://hal.univ-lorraine.fr/tel-01747313\">⟨tel-01747313⟩</a>", "title_s":["Propriétés combinatoires pour la terminaison de systèmes de réécriture", "Combinatorial properties for termination in term rewriting theory"], "authFullName_s":["Hélène Touzet"], "halId_s":"tel-01747313", "docType_s":"THESE", "producedDateY_i":1997}] }}

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Helene Touzet